MDI Biological Laboratory's Projects
A root directory for Biocore pipeline analysis
A collection of bash and R scripts intended to automate principle components analysis
Central repo for all non-project-specific documentation. Includes biocore best practices and guidelines.
A repository to store miscellaneous scripts and programs used for different admin purposes
Repo to contain analysis/json/config/metadata files and descriptions
Resources for RNA-SEQ pipeline analysis
a test repository to explore re-organizing and re-structing biocore_analysis
A repository to create automations that download external datasets
Experimenting with ERCC spike in normalization
contains practice exercises
Repo for Integrated Differential Expression Analyzer
Repository for working with our DEseq2 R script
A repository to create automations that download and Install external bioinformatics packages.
modified cwl workflows for parameter tweaking
Collection of SVASeq R scripts for the REGENE14 and REGENE15 datasets
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Repo for tximport R script and accompanying JSON config file
Repo for Unusual Gene Group Selector python project
Workflows in the Cloud