mdozmorov Goto Github PK
Name: Mikhail Dozmorov
Type: User
Bio: Bioinformatician, interested in 3D genomics, cancer, statistics, programming, machine and deep learning
Twitter: mikhaildozmorov
Mikhail Dozmorov's Projects
lecture1
Test repo
liftover_test
liftOver example
liftoverbedpe
A liftOver wrapper to accomodate BEDPE files
lrcde.dev
LRCDE package - cell type-specific gene expression analysis
mac_notes
Miscellaneous documents
machinelearning_notes
Machine learning and deep learning resources
manuscript_template
Template of a manuscript in Rmd
mdgenomerunner
MD functions mostly for GenomeRunner project. See MDmisc R package for MD miscellaneous functions
mdmisc
MD helper functions. Previous version at https://github.com/mdozmorov/MDgenomerunner
mdnotes
Links to all data science, genomics, and other notes
mdtemplate
A template for coding in RMarkdown
mediabuilder
methylation850k
Methylation analysis of Illumina 850K arrays
methylation_notes
Notes on DNA methylation analysis
microbiome_notes
A continually expanding collection of microbiome analysis tools
mit6874.github.io
msigdf
Molecular Signatures Database (MSigDB) in a data frame
mutationalprofiles
nci60
Playground with omics data from NCI-60 cell lines
neuralart_tensorflow
Implementation of "A Neural Algorithm of Artistic Style" by Tensorflow
ngs-bits
Short-read seqencing tools
normalista
A Jekyll course template for teachers who like to write markdown, host in Github pages and hate worrying about servers
nullranges
Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrap samples of ranges (using the block bootstrap framework of Bickel et al 2010), or set of control ranges that are matched across one or more covariates.
onco_lnc
oncoenrichr
Cancer-dedicated gene set interpretation
osta-base
Files for "Orchestrating Spatial Transcriptomics Analysis with Bioconductor" (OSTA) online book
paper-hmp2
HMP2Data: an R package to access multi-omics data from the integrative Microbiome Project
pathwayrunner
PathwayRunner computed enrichment of gene set(s) in all pathways using hypergeometric test
pcaworkshop
A introduction to PCA in R
pkg_primer
R package primer: a minimal tutorial on writing R packages
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