Giter VIP home page Giter VIP logo

Martin Smith's Projects

basicfmatest icon basicfmatest

Just a basic FMA4 test for our (and potentially your) FMA4 compatible systems (eg. Bulldozer, Interlagos...)

bsrelbatchrunner icon bsrelbatchrunner

A python program to run BSREL on batches of input Nexus files utilizing bpsh and a cluster.

cacl icon cacl

Codon Aligner in OpenCL

deepconsensus icon deepconsensus

DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.

dumbview icon dumbview

A PacBio genome browser for command line nerds

hyphy icon hyphy

HyPhy: Hypothesis testing using Phylogenies

iteroptbsrel icon iteroptbsrel

HyPhy batch files to iteratively optimize a BSREL model of sequence evolution

matmullibpy icon matmullibpy

A library for fast Matrix Multiplication in Python, with OpenCL acceleration.

mlepyocl icon mlepyocl

using pyOpenCL to accelerate a model of MLE

mulmullibcpp icon mulmullibcpp

Multiple multiplication (e.g. exponentiation and maximum likelihood) library accelerated with OpenCL

multibsrel icon multibsrel

A batch file for running BSREL, BSREL3 and MG94 quickly, easily, and comparably.

oclcalcbench icon oclcalcbench

A suite for testing and benchmarking various memory accession techniques in OpenCL

oclcopybench icon oclcopybench

A suite for testing and benchmarking various methods of getting data from host to device. I'm going to go crazy and put reading and writing from device memory in here too. Wow!

oclhyphy icon oclhyphy

OCL implementation of the maximum likelihood calculation.

oclhyphytree icon oclhyphytree

OpenCL implementation of HYPHY's Maximum Likelihood loops

pbdoctorb icon pbdoctorb

PacBio data inspection/munging tools (unsupported)

prmm icon prmm

PulseRecognizer minus minus

pysam icon pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

pyxsd icon pyxsd

Python Class Mappings for XML Schema

screenspin icon screenspin

A fun shell script for checking whether or not you are in an instance of GNU Screen

seqchomp icon seqchomp

Shortens the sequences in a Nexus file.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.