medicalimageanalysistutorials Goto Github PK

abdominal_registration

Deep learning based registration for Learn2Reg Challenge (Task 3 : CT Abdominal)

adlreg

Our(team: winter) solutions for MICCAI Learn2Reg 2021.

bezierinfo-2

The development repo for the Primer on Bézier curves, https://pomax.github.io/bezierinfo

btkcore

Core of the project to represent biomechanical data, file formats and data processing

clara-train-examples

Example notebooks demonstrating how to use Clara Train to build Medical Imaging Deep Learning models

cochlea_segmentation_docker_monai

deeplearning4all

deepreg

Medical image registration using deep learning

digital-image-processing-gonzalez

Codes for examples in Digital Image Processing (Gonzalez) 冈萨雷斯《数字图像处理》

docopt.cpp

C++11 port of docopt

elastixmodelzoo

Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix

extensionsindex

Slicer extensions index

facedetection

Face Detection using ViolaJones on the CBCL Face Database

gradientdescenttutorial

A simple tutorial of Gradient Descent Optimization in image processing

imageregistrationtutorial

This project is to help students and researchers to learn the theory of medical image registration in a simple and practical way. I will try to explain the math using simple language and python code. The tutorials are python notebook based that you can run directly in Google colab. Your correction, feedback, and support are more than welcome!

instantmeshes

Interactive field-aligned mesh generator

itkelastix

An ITK Python interface to elastix, a toolbox for rigid and nonrigid registration of images

learn_deep_learning_in_6_weeks

This is the Curriculum for "Learn Deep Learning in 6 Weeks" by Siraj Raval on Youtube

linterp-src

Linear Methods for Image Interpolation - Pascal Getreuer

math-as-code

a cheat-sheet for mathematical notation in code form

medicaldataaugmentationtool

medicaldataaugmentationtool-celltracking

medicaldataaugmentationtool-heatmapregression

medicaldataaugmentationtool-heatmapuncertainty

medicaldataaugmentationtool-mmwhs

medicaldataaugmentationtool-verse

medicaldetectiontoolkit

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

mri-to-ct-dcnn-tensorflow

This repository is the implementations of the paper "MR-based Synthetic CT Generation using Deep Convolutional Neural Network Method," Medical Physics 2017.

mutualinformationtutorial

A simple tutorial of mutual information for images

nndetection

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.