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cobrapy_to_binder

only a dummy test project

component-contribution

Standard reaction Gibbs energy estimation for biochemical reactions

cookiecutter-data-science-simplified

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

croissance

Tool for estimating growth rates from microbial growth curves

data-describe

data⎰describe: Pythonic EDA Accelerator for Data Science

escher

Build, view, share, and embed pathway maps.

escher-maps

Extracted metabolic maps (OLD)

etfl

ETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints

geckopy

Enzyme-constrained genome-scale models in python

goatools

Python scripts to find enrichment of GO terms

iloop_rnaseq_pipeline

RNA sequencing data analysis pipeline for iLoop

imodulonminer

Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA

impute-me

impute-me taken down repo

modelling_vibrio_natriegens

ostir

Software for predicting translation initiation rates in bacteria

pbs-torque

pymodulon

Python package for analyzing and visualizing iModulons

pytfa

A Python 3 implementation of Thermodynamics-based Flux Analysis

reference_sequences

Internal reference sequence bank

retropathrl

Reinforcement Learning based bioretrosynthesis tool

rgaat_v2

Add multiple thread function for genome comparison

samplesheet

Illumina SampleSheet Processing