merlyescalona Goto Github PK

chicago

cph-hummers-coverage-analysis

Coverage analysis of the data from the targeted-sequencing experiment of Hummingbirds (data from the paper Fonseca et al. 2018)

cuvi.ios

Repositorio de los ejemplos realizador en el curso de iOS en la Universidad de Vigo

datasciencecoursera

Data Science Toolbox github repository

datasharing

The Leek group guide to data sharing

eseidojo-opencv-python

This is basic code to read, create and handle images and videos with Pyhton and OpenCV.

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

gacmsa

GACMSA: Get Allele counts from Multiple Sequence Alignment files

indelible-ngsphy

This is a fork of the original INDELible (Fletcher and Yang, 2009), a simulator of biological evolution. Now allowing the use of a sequence as ancestral.

mapping_pipeline

Mapping pipeline for data generated using Arima-HiC

me-bioinf-utilities

Random scripts to solve small bioinformatic-related problems

molluscs-paving

Simulations for the discovery of PAV

mutation-simulator

Mutation-Simulator is a tool designed to simulate mutations on given fasta files and creating an according vcf or csv file, which contains all information about the mutations.

ngsphy

NGSphy: phylogenomic simulation of next-generation sequencing data

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

refselector

For simulations of targeted-sequencing experiments under a known species/gene tree distribution, extracts the reference sequences that be used for mapping.

repdata_peerassessment1

Peer Assessment 1 for Reproducible Research

simphycompress

Compresses SimPhy datasets into a single gzipped file for all the gene trees and gzipped mulitple sequence alignments for all the loci.

simpred

SNV impact predictor

tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

travis-ci-tests

Trying to omit constantly modifying the source repo to fix installation issues

ucsc-eeb-intro2comptools

Workshop/seminar on basic programming skills for biologists / Introduction to computational tools

vc-benchmark-cesga

Variant callers benchmark using in silico targeted-sequencing datasets with pipeline optimized for SLURM @ CESGA, ES.

web

yagcloser

YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.