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academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

awesome-deconvolution

List of deconvolution methods and resources.

awesome-nextflow-benchmark

List of NextFlow workflows for benchmarking.

bisque

An R toolkit for estimation of cell composition from bulk expression data

braincellularcomposition

bseqsc

Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline

cellscalefactors

R/Bioconductor datasets compiling cell scale factor references for deconvolution.

cgmapper

Map and visualize genomic CpGs (shinyR)

cmlmanuscript

Resources to reproduce analysis for the manuscript "Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk."

code_portfolio

Professional portfolio of code and code applications.

colon_superenhancer_methylation_project

Colon super-enhancer methylation impacts gene expression in a tissue-specific manner in colorectal cancer.

consensus_machine_learning

Package to reproduce analyses for the manuscript "Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk".

deconrnaseqparam

Object class definition and methods for deconrnaseqParam, a type of deconvolution algorithm.

edirect_docker

Make the Entrez Direct Utilites Docker image

epicparam

Object class definition and methods for EPIC, a type of deconvolution algorithm.

figshare-doi-badge

testing badge inclusion in readme

galaxy-hub

Galaxy Community Hub

gans_for_credit_card_data

gdc_download_tools

Directions and code for generic GDC data downloads.

gem

genemapr

Repo containing info and workhorse scripts to aid gene ID mapping and coordinate retrieval.

geoarraydigest

Resource for summarizing and tracking new array samples published to NCBI's Gene Expression Omnibus (GEO) database.

georacle

gh-website

Host a professional or personal website on GitHub.

glab_posters_and_presentations

Posters related to work performed by Grady Lab

gooddoc

A Template for Clear and Simple Documentation of Bioinformatics Code

google-research

Google Research

hca

hexsticker

:sparkles: Hexagon sticker in R

hm450hg38manifest

Manifest prepared for HM450 array with hg38 genome build