mgperry Goto Github PK

encode-api

heatmaps

Plotting package originally based around the seqPattern Bioconductor package. Still very much in development.

interactionset

Bioconductor class for genomic interaction data

kak

never going back to vim

plyrs

yet another dplyr-in-python: based around polars with BRAND NEW dot-free chaining syntax

polars

Fast multi-threaded, hybrid-out-of-core DataFrame library in Rust | Python | Node.js

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

regulation-pwm-tools

Tools for loading PWMs and running MOODs for our internal pipelines and method development

rswitch.py

A small python script that gives the functionality of Rswitch from the command line

trackhub

create, manage, and upload track hubs for use in the UCSC genome browser

train-aquafaang-bioinf

AQUA-FAANG Bioinformatics training course on regulatory elements

treecl

Clustering phylogenetic trees with python