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akwaboah-hipsc-model

This repository contains code and supplementary material for our computational hiPSC-CM model.

bnglonlat

Pure python implementation of convert_longlat from convertbng

cellml-specification

cellml-validation

A suite of CellML files used to test validation methods

cellml1to2

Attempt at using XSLT to translate CellML 1.0 and 1.1 documents into the proposed CellML 2.0 format.

chi

Chi is an open source Python package which is designed for dose response modelling.

driving-term

Driving terms for ionic current models

eisner-example

Messing around with Jupyter and an example by Eisner et al.

fittingalgorithm

The fitting algorithm of Beattie et al, modified to allow fitting to multiple protocols.

fitzlet

Fitzlet: Simplified 2d electrophysiology simulator for android

importance-of-binding-mechanism

Source code and data used in the article "Importance of modelling hERG binding in predicting drug-induced action potential prolongations for drug safety assessment" (Farm et al. Frontiers in Pharmacology, 2023)

ipsc-leak-artifact

Simulations and figures for manuscript showing descriptive ability of iPSC-CM+artifact models

libcellml

Repository for libCellML development: Michael's fork

making-figures

Tips on figure making, plus help with Inkscape and Matplotlib.

mutations-scn5a

Code for Clerx, Heijman, Collins, Volders (2018) Predicting changes to INa from missense mutations in human SCN5A

optimiser-overview

Incomplete overview of optimisation methods

pystan

PyStan, a Python interface to Stan, a platform for statistical modeling. Documentation: https://pystan.readthedocs.io

python-c-example

Example code of a C python extension

wevis

Network module for Where's Ben Nevis