Comments (8)
Hi, sorry I did not encounter such errors before and have no idea how to fix it.
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Okay, thank you!
from deepmicrobes.
Hello, I have another question. The default batch size for training is 32, while the default batch size for prediction is 8192. I'm wondering what the difference is between the two and why the values are so different.
from deepmicrobes.
For prediction, the batch size has no effect on the results, so I tend to use the largest batch size that fits into memory. For training, batch size is an important hyper-parameter that users should carefully tune.
from deepmicrobes.
Okay, thank you!
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Hello, have you encountered a similar error during prediction before? I have modified my num_classes, vocab_size, and k-mer.
Error:Assign requires shapes of both tensors to match. lhs shape= [2505] rhs shape= [1]
[[node save/Assign_7 (defined at /anaconda3/envs/DeepMicrobes-master/lib/python3.6/site-packages/tensorflow_core/python/framework/ops.py:1748) ]]
from deepmicrobes.
Hi, I have not encountered a similar error. It seems that the number of classes was left as the default 2505. Not sure why.
from deepmicrobes.
Okay, thank you very much for your patient response.
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Related Issues (20)
- 0 byte .tfrec HOT 3
- UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
- Error: seq-shuf not detected HOT 1
- Future work?
- problem running the example tfrec conversion on Windows Subsystem for Linux WSL and likewise on docker HOT 7
- running DeepMicrobes in RHEL 8.4 HOT 5
- failed prediction only in some samples HOT 2
- Error in tfrec_train_kmer.sh with a customized training set HOT 3
- model weights not saving? HOT 2
- Error in tfrec_train_kmer.sh with SILVA 138.1 SSU database as training set HOT 5
- Versioned release package for DeepMicrobes HOT 11
- UnicodeEncodeError: 'ascii' codec can't encode character '\ufeff' in position # HOT 5
- Running DeepMicrobes with TensorFlow 2.x HOT 4
- 关于DeepMicrobe论文中的细节问题想向您请教 HOT 2
- Trained weights not accesible HOT 2
- Request for Pretrained Model
- Question about training a DeepMicrobes model to predict the taxonomy from phylum to species HOT 13
- Error training a custom model HOT 3
- where is tfrec_predict_kmer.sh? HOT 1
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