Comments (1)
Alternatively, is there a way to specify trios for --abbaclustering analysis, because it takes quite a lot longer than regular Dtrios when running for all my 190 species. Thanks!
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Related Issues (20)
- Dquartets Output error in Dsuite HOT 4
- make a release or tag versions ?
- Mixed ploidy within populations HOT 2
- Out of Range error: map::at HOT 1
- The sample is in the VCF but not assigned in the SETS.txt HOT 8
- Question about order of population set when running Dtrios HOT 1
- Only plot fbranch results with Z>=3 HOT 1
- When I finished running Dquartets, the output file was blank. HOT 5
- Fbrach error: The tree string could not be parsed correctly!
- non-significant D-statistic with significant clustering (homoplasy test) HOT 2
- Dinvestigate error with vcf. Not sure why
- Question about Dsuite Dinvestigate HOT 3
- Dinvestigate issue: D.cpp:80: void doAbbaBaba(): Assertion `threePops.size() == 3' failed HOT 2
- Cannot get Dinvestigate to run HOT 2
- Compilation error HOT 1
- compatible VCF format with pool sequencing data option HOT 2
- Could Dinvestigate (fd, fdM, and df) identify the direction of gene introgression?
- Empty file of local genomic windows of fd after Dinvestigate
- Dsuite Dinvestigate -w 50,25 $IN_vcf $Pop_list $trios_list
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