Describe the MIMIC data tables in the web documentation about mimic-website HOT 14 CLOSED

@alistairewj, see issue #11. The individual table descriptions have been combined into a single page, which I think is cleaner.

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Oh, I already started writing documentation keeping each table separate. I think it will be a useful reference. Let me upload it - let me know what you think.

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Whoops, sorry. It should be fairly simple to reorganize the content whichever structure we choose. Quick chat on Slack to work out a plan?

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Okay see 1c54d61 for the initial commit of the documentation in a table wise manner. I like the level of detail, definitely want to add more in some places, but feel like we should have a higher level description of all the tables in a main page in the documentation.

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Nice work, those pages look great. I like the level of detail that you've provided and it probably makes sense for them to be listed as separate pages, rather than trying to fit everything into a single page. Let's have a play around with the structure to work out the best way of incorporating them. @kepaik may also have ideas.

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So I've updated the pages a bit more, added some content, added some formatting, etc. I feel as though the table detail section would be best as a subsection of an overall "MIMIC Doc" menu item - otherwise it's easy to get lost in the menu on the left. Let me know your thoughts!

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There are some tables I'm not sure about:

• MICROBIOLOGYEVENTS - Didn't work with this table - do you want to chime in a bit here Tom? Should we ask a clinician about any of the columns? Or a data archiver (as there are some "code" columns).
• NOTEEVENTS - What does the error column mean?

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For prescriptions, I recall the ENDTIME sometimes occurring just before the STARTTIME: did we ever figure that out?

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If I recall our conversation with @fsalgueiro correctly, we didn't find a clear explanation for the STARTTIME/ENDTIME question, but there was a hint that it related to cancelled orders. The issue that this relates to in the building MIMIC repo is MIT-LCP/mimic-iii-building#73

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NOTEEVENTS - What does the error column mean?

The column highlights that an error was made in the note. I'll need to look back at the data to give a detailed explanation...

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Alistair,
I can help you with this, but I leave today. I will pop by the office
for a short time around noon and will check on you if I have time...
Roger

On 9/4/2015 7:00 AM, Alistair Johnson wrote:

There are some tables I'm not sure about:

• MICROBIOLOGYEVENTS - Didn't work with this table - do you want to
  chime in a bit here Tom? Should we ask a clinician about any of
  the columns? Or a data archiver (as there are some "code" columns).
• NOTEEVENTS - What does the error column mean?

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#4 (comment).

Roger G. Mark, M.D., Ph.D.
Professor of HST and EECS
Massachusetts Institute of Technology
Room E25-505
Tel - 617-253-7818
Fax - 617-258-7859

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I'm currently in my old UK office - so you might miss me! But Tom is there

• and there are only a few columns which don't have descriptions right now.
  Thanks.

On Fri, Sep 4, 2015 at 2:20 PM, rgmark [email protected] wrote:

Alistair,
I can help you with this, but I leave today. I will pop by the office
for a short time around noon and will check on you if I have time...
Roger

On 9/4/2015 7:00 AM, Alistair Johnson wrote:

There are some tables I'm not sure about:

• MICROBIOLOGYEVENTS - Didn't work with this table - do you want to
  chime in a bit here Tom? Should we ask a clinician about any of
  the columns? Or a data archiver (as there are some "code" columns).
• NOTEEVENTS - What does the error column mean?

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<
https://github.com/MIT-LCP/mimic-website/issues/4#issuecomment-137704777>.

Roger G. Mark, M.D., Ph.D.
Professor of HST and EECS
Massachusetts Institute of Technology
Room E25-505
Tel - 617-253-7818
Fax - 617-258-7859

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#4 (comment)
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@alistairewj we just had a chat about microbiology events table. Everything seems pretty clear, so I'll add some notes to the documentation.

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Awesome! Thanks!
On 4 Sep 2015 16:01, "Tom Pollard" [email protected] wrote:

@alistairewj https://github.com/alistairewj we just had a chat about
microbiology events table. Everything seems pretty clear, so I'll add some
notes to the documentation.

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#4 (comment)
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