mmayers12 Goto Github PK

basic-scripts

crossval

Cross validation for Project Rephetio

data_tools

Tools for obtaining, manipulating, and visualizing data

disease-ontology

drugmechdb

A database of paths that represent the mechanism of action from a drug to a disease in an indication.

genewikiworld

Generate a network of all items we care about, and some we don't....

hetnet_ml

Software to quickly extract features from heterogeneous networks for machine learning.

integrate

Data integration for Project Rephetio

learn

learn-1

Machine learning for Project Rephetio

metapaths

Augmenting a network to find metapaths that capture a Drugs MoA

myvariant.info

MyVariant.info: Variant Annotation as a Service

n15_mice

Code accompanying the manuscript "Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease"

path_plots

A simple repo to quickly plot paths in a newtorkx graph

rcfiles

rc and dot files from my various systems

rephetio-coord

Master coordinator of the rephetio project.

semmed

Code accompanying the manuscript "Time-resolved evaluation of compound repositioning predictions on a text-mined knowledge network"

testworkflow

Testing some Github Action workflows

wd_property_paths

wikidata

wl

Tools for analyzing weightlifting data

world_happiness

Analysis of World Happiness Dataset from Kaggle Competition