Comments (8)
Hi Valentin,
Hmm good point about keeping the labels consistent. Does "delta of the
deltas" make (more) sense to you? I made the change to plot.mobr() because
it was proven to be a somewhat confusing concept in our discussions. The
values are indeed difference between the differences (which is where the
delta-of-delta came from) but they can also be interpreted as the unique
effect of each factor on S. Let me open an issue for now and see what other
folks think.
Thanks,
Xiao
On Tue, Oct 11, 2016 at 5:47 AM, Valentin S [email protected]
wrote:
Hi @rueuntal https://github.com/rueuntal !
I saw that some minor changes took place in the OY label names inside the
plot.mobr() function.
Line 98 in mobr.R is nowylabs = rep('delta-S', 3)
And previously it was
ylabs = c('delta-S', rep('delta-delta-S', 2))
Shouldn't the old line of code be kept? Otherwise is also not consistent
with the output from plot_9_panels() function. But I'm not familiar with
the entire concept so, please correct me if I'm wrong.Best,
Valentin—
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Oops what was I thinking... it's already an issue :)
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@valentinitnelav and @rueuntal I think the old labels were better. Let's keep brainstorming if there is a simpler way to refer to the delta of the delta S values.
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I'll add this to a pull request I'll submit in the next few days.
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Thanks Dan - I'd have no objection to reverting it back if it doesn't prove to be a hurdle for users.
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Sounds good. I'm working tonight trying to smooth out some of the edges on
the package and make it so that it can be loaded with the function
'library' fingers crossed!
On Sun, Nov 20, 2016 at 9:28 PM, Xiao Xiao [email protected] wrote:
Thanks Dan - I'd have no objection to reverting it back if it doesn't
prove to be a hurdle for users.—
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Daniel J. McGlinn, PhD
Assistant Professor
College of Charleston
Department of Biology
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Great!
On Sun, Nov 20, 2016 at 9:29 PM, Dan McGlinn [email protected]
wrote:
Sounds good. I'm working tonight trying to smooth out some of the edges on
the package and make it so that it can be loaded with the function
'library' fingers crossed!On Sun, Nov 20, 2016 at 9:28 PM, Xiao Xiao [email protected]
wrote:Thanks Dan - I'd have no objection to reverting it back if it doesn't
prove to be a hurdle for users.—
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.Daniel J. McGlinn, PhD
Assistant Professor
College of Charleston
Department of Biology
Harbor Walk West, rm 203
360 Concord Street
Charleston, SC 29401
http://mcglinn.web.unc.edu/
office: 843-953-0190
cell: 405-612-1780—
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Assuming we are all happy with the current axis name ("Change in S due to sth") I'll go ahead and close this. But if anyone is not happy feel free to reopen.
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Related Issues (20)
- improve make_mob_in() function when spatial coordinates not available HOT 10
- Prepare for CRAN submission
- rarefaction dens_ratio argument HOT 1
- Add formula specification method for mob stats
- readme needs updating
- Extract direction of 'effect size' (D-bar) HOT 3
- make it clearer how statistics can be accessed
- Warning needed: Computing and plotting issues when the design is unbalanced HOT 7
- kNCN method not using great circle distances
- todo: post v2.0 release HOT 6
- beta diversity calculations HOT 10
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- Negative S_PIE values when very small non integer abundances HOT 11
- Wrong result from calc_SPIE when there are only singletons HOT 2
- "mob" in the headlines HOT 2
- vignette and documentation todo HOT 4
- betaC calculation should richness be extrapolated? HOT 4
- Error in `get_delta_stats` for calculating density effects when dens_ratio < 1
- calculation of betaC fails when there are at least 1 doubleton but no singletons HOT 4
- towards more consistent computation of alpha, gamma, and beta diversity HOT 5
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