Comments (10)
Also add package rgl
which is used by the function plotSNpie
. I can see that on my server which is a "headless" machine I have some trouble installing rgl
which means we may want either a more general solution to rgl
such as suggested here: http://stackoverflow.com/questions/37521259/using-rgl-with-headless-display or some method way of keeping the function unchanged and just printing a warning that it doesn't work on headless machines. I'm leaning towards the latter option which requires less work.
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the specific function the rgl
package needs is plot3d
. Also the function plotSADs
needs scales::alpha
for setting transparent colors
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I think rgl
and scales
should be listed as "Suggests" rather than "Depends" in the description file and therefore will not be installed when mobr
is installed because they are such fringe cases and at least rgl
will cause trouble on headless machines.
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I can no longer seem to remember where in the package quadprog
is needed this package only has two functions: solve.QP
and solve.QP.compact
. I don't think we use either of these so maybe I made a mistake @rueuntal does this ring any bells?
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@dmcglinn thanks for looking into the details! What you suggested for rgl
and scales
sound very reasonable to me. I don't remember quardprog
either - could it have crept in when we were testing all the different algorithms for aggregation? And I don't recall anything relying on optimization at the moment. Let's get it removed.
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After having moved several packages from the Suggests category to the Depends category many more install errors are occurring due to needed second order dependancies. Here is a list of packages that resulted in errors: htmlwidgets
, quadprog
, shiny
, munsell
, SpadeR
, and plotrix
. It appears SpadeR
caused a problem because it is listed as a remote but not as a Depends.
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Hey @dmcglinn - sorry I'm a bit confused, what do we need to do here?
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Got it. Thanks.
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Hi @dmcglinn,
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Related Issues (20)
- improve make_mob_in() function when spatial coordinates not available HOT 10
- Prepare for CRAN submission
- rarefaction dens_ratio argument HOT 1
- Add formula specification method for mob stats
- readme needs updating
- Extract direction of 'effect size' (D-bar) HOT 3
- make it clearer how statistics can be accessed
- Warning needed: Computing and plotting issues when the design is unbalanced HOT 7
- kNCN method not using great circle distances
- todo: post v2.0 release HOT 6
- beta diversity calculations HOT 10
- effort = NA by default in calc_comm_div and calc_div leads to not so indicative error messages
- Negative S_PIE values when very small non integer abundances HOT 11
- Wrong result from calc_SPIE when there are only singletons HOT 2
- "mob" in the headlines HOT 2
- vignette and documentation todo HOT 4
- betaC calculation should richness be extrapolated? HOT 4
- Error in `get_delta_stats` for calculating density effects when dens_ratio < 1
- calculation of betaC fails when there are at least 1 doubleton but no singletons HOT 4
- towards more consistent computation of alpha, gamma, and beta diversity HOT 5
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