Name: Uppsala University, Department of Medical Sciences, Molecular Precision Medicine
Type: Organization
Bio: Molecular Precision Medicine research group and the SNP&SEQ Technology Platform
Location: Sweden
Blog: www.molmed.se
Uppsala University, Department of Medical Sciences, Molecular Precision Medicine's Projects
ALLoy is a user-friendly web application that allows the rapid subtyping of ALL patients using ALLIUM (ALL subtype Identification Using Machine learning)
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Documents for programs related to Chiasma
Web service for Chiasma, handling large files with genotype results
Auxilliary client for Chiasma, placing plates and tubes in right location at lab with use of a barcode scanner.
A set of small programs that are refered to in the SNP&SEQ quality system
Extensions for Clarity
CopyNumber450kCancer R package
A reporting service that is used by Chiasma, showing customer reports with genotyping statistics.
A set of db-procedures and sql scripts related to the Chiasma system
A delivery script created for UGC, which wraps the necessary Supr interactions and mover
CLI for developing ELK configurations and groks
Developer-friendly predictive modeling framework
Project statistics export utility
Demultiplex Illumina FASTQ files
Client for loading results from the FP instrument. (Visual Basic)
Translates from older gene name aliases to the current HGNC standard gene name
Python interface to the GenoLogics LIMS server via its REST API.
Stand-alone scripts deployed to Irma
Generating encrypted passwords for windows apps (Chiasma)
Code accompanying the manuscript "Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles, by Marincevic et. al."
Hosting web content