molmed Goto Github PK

alloy

ALLoy is a user-friendly web application that allows the rapid subtyping of ALL patients using ALLIUM (ALL subtype Identification Using Machine learning)

backlin-2017

berglund-lindqvist-2013

check-sample-submission

checkqc

CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

chiasma-docs

Documents for programs related to Chiasma

chiasmabulkfileservice

Web service for Chiasma, handling large files with genotype results

chiasmadeposit

Auxilliary client for Chiasma, placing plates and tubes in right location at lab with use of a barcode scanner.

chiasmatools

A set of small programs that are refered to in the SNP&SEQ quality system

clarity-ext

Extensions for Clarity

copynumber450kcancer

CopyNumber450kCancer R package

customerreports

A reporting service that is used by Chiasma, showing customer reports with genotyping statistics.

db_dev_workflow

A set of db-procedures and sql scripts related to the Chiasma system

delivery

A delivery script created for UGC, which wraps the necessary Supr interactions and mover

elk-herder

CLI for developing ELK configurations and groks

emil

Developer-friendly predictive modeling framework

epiqc

exportr

Project statistics export utility

fastq_demux

Demultiplex Illumina FASTQ files

fpdatabase

Client for loading results from the FP instrument. (Visual Basic)

gene-thesaurus

Translates from older gene name aliases to the current HGNC standard gene name

genologics

Python interface to the GenoLogics LIMS server via its REST API.

hercules

irma-scripts

Stand-alone scripts deployed to Irma

krali-palle_2021

krali_2023

machineencrypt

Generating encrypted passwords for windows apps (Chiasma)

marincevic-2017

Code accompanying the manuscript "Transcriptome sequencing in pediatric acute lymphoblastic leukemia identifies fusion genes associated with distinct DNA methylation profiles, by Marincevic et. al."

molmed.github.io

Hosting web content

multiseq-ds