Error using the BioLink model about ontogpt HOT 3 OPEN

Just wondering if this has been fixed yet.

from ontogpt.

I think it should be a quick fix to allow the non-conventional names used in biolink (all other linkml schemas have switched to camelcase + snake case)

however, there will likely be some degree of customization required such as prompt hints, describing preferred annotators, etc. Ideally these would be in a separate configuration file to have separation of concerns but for now it's necessary to do a bit of copy and pasting to get the desired behavior. this should be something we can fix with the linkml-transformer framework!

from ontogpt.

No, not yet - the workaround is to replace the offending class name with something equivalent to the Python class, like chemical to disease or phenotypic feature association -> ChemicalToDiseaseOrPhenotypicFeatureAssociation.
But ideally that shouldn't be necessary.

from ontogpt.