Related Issues (20)
- Add `gpt-3.5-turbo-16k` HOT 1
- Add filters to pubmed-annotate to pre-select entries based on gene annotations and MeSH HOT 3
- Do we need to expose the `temperature` field? HOT 4
- add option to export KGX TSV HOT 2
- Output to ttl or owl fails with `pubmed-annotate` HOT 5
- Gene entities without annotator available HOT 3
- Add interface for abstract OpenAI-equivalent API HOT 3
- Add parsing for tables from clinical case reports
- Add option to use HuggingFace model locally
- Reconfigure HuggingFace Hub interface to use any repo
- Add CellType to IBD extract template
- Add parser for PubMedCentral full texts HOT 3
- Add functionality to pubmed-extract to retrieve PMC XML
- Running web-ontogpt gives Internal Server Error HOT 1
- Add a generate-extract command for parsing the results of generated text
- Add a cell type template
- Grounder doesn't handle non-ascii labels well HOT 1
- Add a FAQ entry for "extra fields not permitted"
- Combine SPIRESEngine with GPT4AllEngine
- SPIRES - How to use domain-specific ontology stored locally in .owl format for grounding? HOT 2
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from ontogpt.