monikabrandt Goto Github PK
Type: User
monikabrandt's Projects
advancedbiopy
aeacus-stats
Collection of python scripts to calculate relevant statistics from fastq-files
arteria-delivery
Micro-service to carry out deliveries on Uppmax
checkqc
checkQC inspects the content of a runfolder and determines if it passes a set of quality criteria
ds_cli
API to access Scilifelab Data Centre's delivery portal. On development
irma-provision
Ansible playbooks for provisioning NGI pipeline and related sw
irma-scripts
Stand-alone scripts deployed to Irma
multiqc
Aggregate results from bioinformatics analyses across many samples into a single report.
multiqc_ngi
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
nf-core-mynewpipeline
This is a test pipeline that I can use to learn how to build a real one.
ngi_pipeline
Code driving the production pipeline at SciLifeLab
piper
A genomics pipeline build on top of the GATK Queue framework
planets-monika
seqreports
In this repository we will gather useful scripts that can be used in the process of developing new sequencing report at the SNP&Seq Technology platform
sisyphus
Pipeline scripts for processing and QC of Illumina HiSeq and MiSeq data
snpseq-archive-upload
Rest service for handling archive uploads
snpseq-archive-verify
REST service for verifying uploaded archives
snpseq-packs
StackStorm packs to automate sequencing center operations
uuadvstatcomp
Course Materials for R course
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