Comments (2)
Hi,
Unfortunately the only filtering that TALON does using the internal priming is after the TALON run. If you wish for these reads to not be used to generate transcript models I would perhaps try to filter your sam / bam alignments for those that have high A content at the 3' end before running TALON, as that might get you closer to your desired output.
from talon.
Yes, we are proceeding now to do this after the TALON label step and remove such reads and then start TALON.
Thank you for the reply
from talon.
Related Issues (20)
- TALON seems to be stuck or I have a least no idea what it is doing. HOT 11
- TALON support for CIGAR strings found in pbmm2 sam files
- new release? HOT 2
- TypeError: stat: path should be string, bytes, os.PathLike or integer, not NoneType HOT 1
- Does TALON database contain the alignments ? HOT 4
- Issue with "Could not retrieve index file" HOT 2
- NameError: name 'vertex_counter' is not defined HOT 6
- Error with installation HOT 1
- Problem with talon_initialize_database HOT 13
- Question - merging TALON databases HOT 1
- Issue with talon filter HOT 4
- internal priming on PCS111 cDNA kit HOT 1
- Antisense after pychopper minimap2. to -uf or not -uf HOT 1
- 'check_database_integrity' error HOT 3
- error when running talon annotator
- What is the meaning of ISM None HOT 2
- Strange error HOT 2
- Multithreading is not working
- The transcript numbers don't match between example_raw_talon.gtf and example_talon_abundance.tsv
- ERROR : [process_sams.py:108:preprocess_sam] when running talon
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from talon.