mperalc Goto Github PK
Name: Marta Pérez Alcántara
Type: User
Company: Wellcome Trust Sanger Institute
Bio: Postdoc at Sanger Institute
Location: Hinxton, UK
Marta Pérez Alcántara's Projects
atac-seq
Analysis of atac-seq data in differentiated iPSC
atacseqqc
ATAC-seq Quality Control
centipede.tutorial
:bug: How to use CENTIPEDE to determine if a transcription factor is bound.
cnn-ipsc
Project with Marta Perez-Alcantara and Agata Wesolowska-Andersen
cnv-resources
Tools to detect CNVs from exome sequencing data
cv
hnf1a
Scripts for single cell sequencing data of HNF1A mutated iPSCs
kolfc2
Analysis of KOLFC2 genotype and transcriptome
marge
API for HOMER in R for Genomic Analysis using Tidy Conventions
methylation
850k methylation (EPIC) Illumina pipeline
mperalc.github.io
name-generator
Java library to generate random name(s) from different languages/cultures
perez-alcantara-et-al-2018
Scripts used in "Patterns of Differential Gene Expression in a Cellular Model of Human Islet Development, and Relationship to Type 2 Diabetes Predisposition"
pipelines
Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
plotting
All that code for plots
popscle_helper_tools
Helper tools for popscle
rna-seq_mapping_pipeline
RNA-seq mapping and deduping with snakemake
test
QC+static DE repository
thesis_scripts
Gathering the scripts used in my DPhil thesis
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