mpievolbio-scicomp Goto Github PK

2023-04-04-mpievolbio

Workshop repository for the Software Carpentry Workshop "Unix, Git, Programming and Plotting with Python" at MPI Evolutionary Biology

2024-03-18-mpievolbio

Workshop Website for Software Carpentries Workshop at MPI Evolutionary Biology

bioconda-recipes

Conda recipes for the bioconda channel.

cancer_sim

CancerSim: A python3 package for stochastic cancer simulation in 2D.

cellbase

High-Performance NoSQL database and RESTful web services to access to most relevant biological data

chado-ld

Linked data representations of the chado database schema

covid-19

covid19casenumbermodel

Fit the algebraic growth of case numbers in Mainland China with an SIR-containment model

cxgviz

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

danq-tf2

DanQ tensorflow implementation

deepannotator

deepgoplus

DeepGO with GOPlus axioms

delta_doc

Documentation Retraining DeLTA 2.0

design-simple-icn3d-ui-for-middle-high-school-students

diffexpr

Porting DESeq2 and DEXSeq into python via rpy2

dlsegbench

Benchmarking deep learning based cell segmentation

dm-workshop2021

Material for the Data Management Workshop at MPI Evolutionary Biology May 17-18 2021

evolution-und-ki

fakedata

Detection of fabricated/falsified data using Brenford's law

gahyparopt

genomefeatureformatontology

An ontology to represent genome feature annotations in gff3 format.

gffpandas

Parse GFF3 into Pandas dataframes

image-dashboard

imgseg-tools

Helpful information about several image segmentation tools. Installation, usage, parameters

introductiontodatamanagement-20200305

Public repo for the Data Management Workshop on March 5 2020 at MPI Evolutionary Biology

isa-explorer

A lightweight web-based ISA-Tab viewer for multiple ISA-Tab files.

isadatasets

Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)

lineage-tracking

machado

This repository provides users with a framework to store, search and visualize biological data.

magritte

A modern software library for simulating radiation transport.