I am an Associate Professor in Durham University's Department of Earth Sciences. I use the fossil record to illuminate the origins of life's complexity. To this end, I have developed and implemented a number of methods to improve the inference of phylogenetic history ("evolutionary family trees"), mainly in R/C++.
See https://smithlabdurham.github.io/ for more about my group's research interests.
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Ternary: create ternary plots and Holdridge diagrams.
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Packages for calculating and evaluating distances between phylogenetic trees: TreeDist, TBRDist, Quartet.
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MapTrees: an interactive user interface for the creation, visualization and evaluation of tree landscapes.
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TreeTools: utilities for the creation, modification and analysis of phylogenetic trees.
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TreeSearch: phylogenetic tree search in R, with an appropriate treatment of ‘inapplicable’ characters.
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Rogue: Identify rogue taxa to improve consensus trees.
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Concentration: Strategies to improve concentration and maximize productivity.
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Ancient Life and its Environment: Teaching resources for a palaeontological half-module.
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preferences: Default configurations for scientific research software.
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dictionary: Personal wordlist of scientific terms to supplement spell-checkers.
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module-map: JavaScript interface to navigate Earth Science degree pathways.
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phylo-workflow: Workflow for semi-automatic phylogenetic analysis of morphological data.
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hyoliths: Supplementary dataset for Sun et al. (2018): a useful template for morphological phylogenetic analysis.
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