Related Issues (20)
- 02-Cleaned not compatible with Discovar
- Flag to skip deduping HOT 3
- call to spades creates empty directory HOT 1
- not portable to OSX HOT 3
- checkPreprocessApplications looks for applications not longer needed or exists HOT 1
- develop_new version does not identify gzipped fastqs HOT 10
- Final fastq compression
- Spades summary stats as in GRC2.0
- sample sheet parser appears to assume column order HOT 4
- More Relevant Error Messages
- Sickle Orphan Single R2 reads should be reverse-complemented
- Do commits so that GitHub copy is updated with installed version. HOT 3
- Output fastq with invalid lines HOT 1
- Contaminants confusion HOT 3
- Preprocessing_Summary.log is empty when skipping certain steps HOT 3
- Explicit clarification on folders/naming/etc. HOT 2
- Stand-alone PE cleaning does not appear to be working HOT 2
- Explicit version checks and application version information HOT 4
- Older-formatted reads with pair information do not produce output fastq files
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