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erum-2020

Jupyter notebook for the talk at eRUM 2020

live_coding

mtreppner.github.io

multiomics_dgms

This is the repository that accompanies the paper "Assessing the power of deep generative models for learning joint embeddings of single-cell multi-omics data."

scdbm-paper

This is the implementation for "Synthetic Single-Cell RNA-Sequencing Data from Small Pilot Studies using Deep Generative Models".

scdbm.jl

This is the implementation for "Synthetic Single-Cell RNA-Sequencing Data from Small Pilot Studies using Deep Generative Models".

scvi

Deep generative modeling for single-cell transcriptomics

scvi.jl

A Julia package for fitting VAEs to single-cell data using count distributions.

scvide.jl

This is the implementation for "scVIDE: Single Cell Variational Inference for Designing Experiments".

scvide_base