mumichae Goto Github PK

aberrant-expression-pipeline

aberrant-splicing-pipeline

bbknn

Batch balanced KNN

bioconda-recipes

Conda recipes for the bioconda channel.

circdeep

End-to-End learning framework for circular RNA classification from other long non-coding RNA using multimodal deep learning

dassie

DASSIE - Detection of aberrant transcription start sites

desc

Deep Embedding for Single-cell Clustering

dialogue

DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.

docker-scanpy-rpy2-micromamba

Docker image with scanpy and rpy2 in micromamba

docker_drop

drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

ecosystem-packages

Registry for scverse ecosystem packages

fraser

jedi

Junction Encoders with Deep Interaction (JEDI) for circular RNA prediction.

mae-pipeline

mudata

Multimodal Data (.h5mu) implementation for Python

opsca-viash

Adapting Open Problems to use viash

outrider

OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

rapids_singlecell

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scgen

Single cell perturbation prediction

scnym

Semi-supervised adversarial neural networks for classification of single cell transcriptomics data

sct-docker

sctk

team-docs

Documentation, guides, tips and tricks when working at the CPG

tmae

wbuild

R project report builder