Comments (4)
Related reading:
- Python standard library: logging module
- Python documentation: Logging HOWTO
- PEP 0391 -- Dictionary-Based Configuration For Logging
- Python Guide: Logging
- Django documentation: Logging (We don't use Django, but this provides some relevant insights anyway.)
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SQLAlchemy Documentation: Configuring Logging
We currently configure the SQLAlchemy engine with echo=True
if the Mutalyzer DEBUG
setting is True
. As per the above docs, we should probably always set echo=False
(and set the loglevel for sqlalchemy.engine
appropriately) if we start using Python logging properly.
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Flask Documentation: Logging Application Errors
Flask has its own logger on the app object. See:
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Example of adding context information to our log messages (e.g., client IP address from the Flask request context): Adding context and formatting to our logs
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Related Issues (20)
- Mutalyzer configuration HOT 3
- "This is not an LRG record." error
- About the reference of 13:46108853 HOT 1
- Inconsistent results between mutalyzer and ref genome fasta HOT 2
- 2 allele descrption not recognized
- Position Converter error "not found in database" suggestion
- Position Converter "Chr" error suggestion
- Silent mutations HOT 1
- Alleles HOT 1
- HGVS link outdated
- submitBatchJob error HOT 3
- Inconsistent NameChecker results for transcript-reference disagree HOT 1
- IGV hg38 TTN gene no NM transcript id, only XM id HOT 2
- Emit warning on position correction
- Mutalyzer down? HOT 1
- Error When using local mutalyzer HOT 1
- Alternate sequence extractor tool/feature? HOT 4
- intron numbering - missing warning HOT 3
- Local Mutalyzer runs slowly HOT 2
- The check position is not exactly the same as my query pos HOT 2
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