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2018_scworkshop

2019-snakemake-ucdavis

Intro to workflows for efficient automated data analysis, using snakemake.

361division

361 Division - Scientific Training, Education and Learning

abacat

🥑 A Bacterial genome Comparison and Annotation Toolkit

ads1-hw-examples

How some homework solutions should work on some small examples

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

arriba

Fast and accurate gene fusion detection from RNA-Seq data

asap

Program for the analysis and visualization of whole-slide images in digital pathology

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

augustus

Genome annotation with AUGUSTUS

auspice

Web app for visualizing pathogen evolution

automated-til-scoring-qupath-classifier-for-melanoma

QuPath TIL classifier for Melanoma on HE slides

bac-ngs-book

病原微生物高通量测序数据分析笔记

basic_unix_2015

basic UNIX workshop materials and files

bind_annotation

Scripts, notes and documents about the BIND annotation workflow (BIND: ab initio gene predictions by BRAKER combined with gene predictions INferred Directly from alignment of RNA-Seq evidence to the genome.)

biocode

Bioinformatics code libraries and scripts

biocoding_tutorial

A tutorial in Python where all the examples teach students about biology. Written for high school students with no previous experience.

bioinformatics-bc

New to Bioinformatics? Start Here!

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

bioinformatics123

bioinformatics_links

bioinformaticsmaterials

Syllabus and materials for bioinformatics lecture + lab

bioprov

A provenance library for bioinformatics workflows 🧬 🔀 📝

biostar-tutorials

Code for biostar tutorials - mostly R and Perl

biotrainee

book

Compiled and pretty version of labs

bpscrnaseq

ccmetagen

Microbiome classification pipeline

cfncluster

CfnCluster is a framework that deploys and maintains HPC clusters on AWS.