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Nate Clark's Projects

bioinformatics_scripts icon bioinformatics_scripts

Scripts used during my analysis of seabird (i.e. Razorbills) Ion Torrent short sequence reads. These scripts will walk you through the processing and alignment of the reads, as well as calling and filtering variants for standard population genetics/genomics analysis. I have included scripts for running cutadapt, bowtie, samtools, bcftools, and vcftools.

pyrad icon pyrad

Assembly and analysis of RADseq data sets

vsearch icon vsearch

Versatile open-source tool for metagenomics

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