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abifreader

Python ABIF reader

alphafold

Open source code for AlphaFold.

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

atom-one-dark-terminal

A Terminal theme that mimics the One Dark theme made by the Atom team.

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 400 universities from 60 countries including Stanford, MIT, Harvard, and Cambridge.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

evodiff

Generation of protein sequences and evolutionary alignments via discrete diffusion models

gfwlist

The one and only one gfwlist here

gpu-jupyter

Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

graphein

Protein Graph Library

hh-suite

Remote protein homology detection suite.

hyraxabif

ABIF parser, writer and generator

papers_for_protein_design_using_dl

List of papers about Proteins Design using Deep Learning

progen

Official release of the ProGen models

proteinmpnn

Code for the ProteinMPNN paper

py3dmol

pytorch-styleguide

An unofficial styleguide and best practices summary for PyTorch

sonnet

TensorFlow-based neural network library

stable-diffusion

A latent text-to-image diffusion model

stable-diffusion-webui-docker

Easy Docker setup for Stable Diffusion with user-friendly UI

transformers-recipe

🧠 A study guide to learn about Transformers