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nadavbra avatar nadavbra commented on July 24, 2024 1

@vuhongai We found that training the model on two different sequence lengths make it better generalize to a variety of sequence lengths (including lengths not included in the training). Once the model is trained, you should be able to use it with whatever seq_len you want (for efficiency reasons, it might be best to invoke it on a batch of sequences with not-too-different lengths and take seq_len to be the maximum among those lengths).

from protein_bert.

vuhongai avatar vuhongai commented on July 24, 2024

Thank you for your insight.
Bests,
Ai

from protein_bert.

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