Comments (6)
Try to contact the CAFA organizers:
https://biofunctionprediction.org/contact/
from protein_bert.
Thanks for the quick response! Sent a request to upload it again.
from protein_bert.
@r-kellerm I wonder if you heard back from CAFA and if you'd be willing to share the solution you found (for the benefit of other users).
from protein_bert.
@nadavbra - no, haven't heard back. Skipped the pretraining for now.
from protein_bert.
The GO annotations can also be downloaded directly from the Gene Ontology website, but it may require writing some new code to process the different format of the data.
from protein_bert.
Thanks, will check this out.
from protein_bert.
Related Issues (20)
- Failing to get the weights from the dedicated github repo HOT 5
- Use ProteinBERT with Own Dataset HOT 3
- Original h5 file HOT 5
- loss plot during pretraining HOT 1
- signal peptide detection HOT 1
- KeyError: "Unable to open object (object 'test_set_mask' doesn't exist)" HOT 6
- How to extract the embedding of an amino acid? HOT 10
- Graph execution error HOT 6
- Extract local and global representation using finetune model HOT 1
- Running Benchmarks HOT 4
- Evaluation on larger data set HOT 6
- Using vector representations in the "weights" parameter in the "embedding" section of an LSTM model after fine-tuning my own data HOT 1
- Failing to extract global embedding (1,15599) -> (1,512) HOT 1
- What do the settings mean? HOT 3
- Error when trying to run the finetuning code given in the jupyter notebook HOT 2
- ValueError, set_weights error
- model_generation.py list is not callable error HOT 2
- GO annotations during fine tuning HOT 1
- Missing MajorPTMs train CSV file HOT 1
- Can't get proteinBERT to run on GPU HOT 1
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