Naim Panjwani's Projects
Sanity check Variant Call Format (VCF) files.
Pipeline using GTEx's docker image in hpc to create eQTLs per sex for brain regions
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
Scripts to help run GWAS from imputed VCF's in parallel on hpf
Pipeline to add genotyped SNPs back post-imputation (specifically, post-imputation with BEAGLE v4 or later)
Analysis of spirometry measures in patients with COPD in the UK Biobank
My own scripts to work with vcf files