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bash_image_processing

A collection of image processing scripts in bash

build_pdb_seqmap

do alignment between seqres and atom records in pdb files

calq3-simple

A simple python script for calculating the Q3 score for secondary structure prediction

calsov

calculate SOV (Segment Overlap Score) for predicted secondary structures

casp11_pcons-net_models

models submitted by Pcons-net on CASP11

dgpred

Calculate DG values (hydrophobicity score) of peptides and proteins

dockercommon

Base docker images

egi-misc-scripts

experiment-2022-04

frag1d

A method for predicting secondary structure and shape strings of proteins from sequences

kalignp

multiple sequence alignment supporting external supplied position specific gap penalties

libpredweb

Library for prediction web-server

misc_sys_admin_scripts

scripts for setting up systems

my-jupyter-notebook

For setting up jupyter notebooks

my_needle

Global pairwise sequence alignment

mydocker

Docker image with docker based on official docker repo

neic2017dockertest

For automatic updating of docker image

pcomb3_casp12

Pipeline for calculating Pcomb3 (ProQ3+Pcons) for CASP12

pconsc3

Faster, more accurate and entirely open source method for predicting contacts in proteins

predzinc

A method to predict zinc-binding sites from amino acid sequences

proq3

This is a fork of the proq3 at https://bitbucket.org/ElofssonLab/proq3

python-novice-inflammation

Software Carpentry introduction to Python for novices using inflammation data.

subcons

Clone of https://bitbucket.org/salvatore_marco/subcons-web-server

terraform-openstack

a collection of terraform scripts for creating various instances on openstack

test-docs

test read the docs with subfolder

test_2019-04-04-nanjiang

Rendering of the workshop-template site

test_github

This is a repo for testing branching with subfolders

tmplot

plotting membrane protein families with highlights for the topology and phylogenetic trees

update_blastdb

Scripts for creating and updating blast database locally

updatepdb

Script to keep a local archive of the PDB structures