narayananr Goto Github PK

awesome-multi-omics

List of software packages for multi-omics analysis

bda_course_aalto

Bayesian Data Analysis course at Aalto

bioinflatexstyles

Bibtex compatible latex templates for a selection of Bioinformatics and Genomics journals

book

bookdown_example

getting started with bookdown

data_science_fundamentals

dataviz

A book covering the fundamentals of data visualization.

dc_2016_04

Data Carpentry materials for Jackson Labs workshop

diploid_txome

Create Diploid Transcriptome with g2gtools and emase

distribution_diagrams

R-script for generating canonical diagrams of distributions to be used to describe Bayesian hierarchical models.

do_allele

do_methylation

dplyr_tidyr_intro

emase

EMASE: Expectation-Maximization algorithm for Allele Specific Expression

emase_paper

empirical-bayes-book

Introduction to Empirical Bayes: Examples from Baseball Statistics

es_rnaseq

fiveminutestats

A repo of short "vignettes" illustrating statistical concepts; http://stephens999.github.io/fiveMinuteStats/analysis/

gbrs

GBRS: A suite of tools for Genome Reconstruction and ASE Quantification

git_basics

intermediate

small R utility for mediation analysis

kallisto-notes

kbroman.github.io

Karl Broman's website

narayananr.github.io

Narayanan Raghupathy's website

oneliners

Useful bash one-liners for bioinformatics.

pandas_tutorial

Pandas tutorial to analyze gene expression data

populase

PopulASE: Population model for improved estimation of Allele-Specific Expression

py10x

Python tool kit for analyzing 10x Genomics Data

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

pystan_examples