nationalgenomicsinfrastructure
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PK
Name: National Genomics Infrastructure
Type: Organization
Bio: The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.
Location: Sweden
Blog: https://ngisweden.se
National Genomics Infrastructure's Projects
NextFlow framework to streamline the Genalice variant call pipeline
Count-based analysis of variants in long amplicons
Database for IGN projects and samples, with RESTful interface. Built on top of Tornado and CouchDB.
The NGI Daily Read
An attempt to make HLA typing from OxfordNanopore reads (MinION platform)
Ansible playbooks for provisioning NGI pipeline and related sw
Python-Markdown extension to wrap the document logical sections (as implied by h1-h6 headings)
Ansible playbooks for provisioning NGI cluster Miarka
Protocols and plates with plate definitions for SPT Mosquito robots
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
SciLifeLab NGI Dashboard Code
Code driving the production pipeline at SciLifeLab
Code to generate reports for use by the NGI in SciLifeLab
Next-Gen Sequencing Visualisation Scripts.
Web tool to find and annotate NGI publications
Wordpress theme and plugins for https://ngisweden.se
A portal for orders (requests, project applications, etc) to a facility from its users.
A genomics pipeline build on top of the GATK Queue framework
NGI plate database
API for a clearer look at clarity
Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud
umi-injector integrates UMI sequences from a separate FastQ file into the read headers of a single or paired FastQ.
Simple user account handling system for use with web services. Built on top of Tornado and CouchDb.
Compare two VCF files and generate individuals stats and comparisons for snp and indels