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601.647_compgenomics_seq

Code written for 601.647 Computational Genomics: Sequences at Johns Hopkins University.

abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

aoc-2023

bioconda-recipes

Conda recipes for the bioconda channel.

c_elegans_drnaseq_analysis

Scripts used in the analysis of C elegans dRNAseq data

conda-env-builder

Build and maintain multiple custom conda environments all in one place.

conda-env-builder-feedstock

A conda-smithy repository for conda-env-builder.

conda-iuc

Conda recipes maintained by the Galaxy IUC.

conda-lock

Lightweight lockfile for conda environments

conduit

CONDUIT - CONsensus Decomposition Utility In Transcriptome-assembly

conduit_publication_scripts

Scripts and test data used in the evaluation of CONDUIT prior to publication

galaxy

Data intensive science for everyone.

galaxytools

:microscope::books: Galaxy Tool wrappers

gatk

Official code repository for GATK versions 4 and up

hts-nim

nim wrapper for htslib for parsing genomics data files

iris

A module for improving the insertion sequences of structural variant calls

meal_randomizer

Randomly pick from tagged recipes to deal with decision paralysis.

pipenv-feedstock

A conda-smithy repository for pipenv.

polyester

Bioconductor package "polyester", devel version. RNA-seq read simulator.

profile-hmm

publicgalaxytools

Tools written for Galaxy / GalaxyPro that can be made public

pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

pyo3

Rust bindings for the Python interpreter

quasar_paper

rs-gfa

GFA parser in Rust

rust-msbwt

place for building up a msbwt resource in Rust

sa_ord

samwell

Samwell: a python package for using genomic files... well

spliceai

A deep learning-based tool to identify splice variants