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schlegelp avatar schlegelp commented on June 18, 2024

See here for a possible way to do this.

This might also be useful to colour by e.g. user

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schlegelp avatar schlegelp commented on June 18, 2024

2d version implemented with 40ad4f6

Possible solution for 3d/3d_complex:
https://stackoverflow.com/questions/49803366/point-opacity-relative-to-depth-matplotlib-3d-point-plot

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schlegelp avatar schlegelp commented on June 18, 2024

implementation for method '3d' with e85254a

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schlegelp avatar schlegelp commented on June 18, 2024

TO-DO:

  • update docs + add examples
  • code cleanup:
    • combine all neurons into a single collection for correct z rendering
    • consider always using tn->parent segments
    • try making depth colouring independent of original skeleton data (use lc.get_segments instead)

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schlegelp avatar schlegelp commented on June 18, 2024

Re z rendering: tried combining neurons into a single Line3DCollection. Turns out that within a collection, z order is determined by order of addition. On the other hand, using a single collection for each segment is correctly rendered but incredibly slow. For now, will probably keep using one collection per neuron.

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schlegelp avatar schlegelp commented on June 18, 2024

Re improving depth colouring: a86924d implemented a better version of getting distance from camera.

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schlegelp avatar schlegelp commented on June 18, 2024

This feature is now well implemented and stable, so I'll close the issue.

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