Comments (3)
Tests for synchrony_onerep:
- output should be numeric
- output should be between 0 and 1 for Loreau, and between -1 and 1 for Gross
synchrony
-output should be a dataframe
-first column should be the same type as the input column (whatever rep is)
-second column (synchrony) should be numeric
-values in second column (synchrony) should range from 0 and 1
-should run if 1=< replicates
These are general, I'll add some dummy data to test the output too.
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For the "Gross" metric, need to determine and accommodate the proper way to handle situations in which a species doesn't vary at all over the time series. Currently gives a warning that the std dev is zero, and returns an NA.
For example, using the KNZ_001d data, subplot D_5, salvia azurea has an abundance of 3 across the time series, and so returns an NA.
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If using Gross metric, now there is a test for species which do not vary in abundance over time within a sample (subplot). If so, issues a warning and omits that species from the focal species list.
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Related Issues (20)
- multivariate_difference fails for dataset with one replicate
- Time analysis not with years but with dates HOT 4
- update codyn for R 4.0 HOT 2
- update cran-comments, description, and version for 2.0.4 HOT 6
- Installation error: package 'codyn' is not available (for R version 3.6.2) HOT 2
- new release for R R version 3.6.3 or above? HOT 2
- add paper ref to DESCRIPTION HOT 4
- replicate column and mutiple records error message HOT 4
- codyn 2.0.4 failing CRAN checks HOT 3
- prep release for 2.0.5 HOT 4
- Dealing with multiple ASV classified as unknown HOT 1
- synchrony.R line 113 does not work as intended HOT 4
- synchrony.R line 166 ['Gross'] creating error HOT 4
- community_stability is missing the species.var argument HOT 2
- Error in names(output) <- `*vtmp*` : 'names' attribute [1] must be the same length as the vector [0] HOT 5
- synchrony.R; metric = "Gross" producing different synchrony measures than expected HOT 2
- requesting rephrasing of error message for function `check_multispp` HOT 5
- Generate null communities for synchrony (Gross)
- rate_change_interval w Bray curtis
- rate_change_interval doesn't calculate intervals based on time between samples
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