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alview

Alview : Alignment View for BAM files - a fast,portable tool for viewing short reads as native GUI program, command line or via webserver

annotation-and-image-markup

Annotation and Image Markup (AIM) is the first project to propose and create a standard means of adding information and knowledge to an image in a clinical environment, so that image content can be easily and automatically searched.

automation

Created as per request NCI-RITM0065579 as part of SVN to GitHub migration

bemt

Biobank Economic Modeling Tool

bioconductor

bioconductor_v1

c3pr

C3PR is a web-based application that can be used for end-to-end registration of patients in clinical trials.

c3pr-docs

This is the document repository of the c3pr project under the NCIP channel.

caadapter

caAdapter provides model mapping, data mapping and transformation services among data sources like HL7 and Regulatory Data Sets.

caaers

caAERS is a web application for recording and reporting adverse events that occur during cancer clinical trials

caaers-docs

This is the documentation repository for Cancer Adverse Event Reporting System (caAERS) project that is under the NCIP channel

caarray

caArray is a web-based application supporting the storage, annotation, and sharing of microarray data.

caarray-docs

This is the documentation repository for caArray project that is under the NCIP channel.

cab2b

cancer Bench-to-Beside (caB2B) is an open-source query tool that permits translational research scientists to search and combine data from virtually any caGrid data service.

cabio

caBIO (cancer Bioinformatics Infrastructure Objects) is a resource for accessing molecular annotations from curated data sources.

cacis

The Cancer Clinical Information Suite (caCIS) project contains the middleware components that allow source system to transmit the clinical data to the recipient systems using different transmission formats as well as protocols.

cacis-docs

This repository contains all the documentation for the Clinical Information Suite (caCIS) project under the NCIP channel.

cacore-sdk

The caCORE Software Development Kit (SDK) generates a system built on the principles of Model Driven Architecture (MDA), n-tier architecture and a common API for data access. When the caCORE SDK-generated system is combined with controlled vocabularies and registered metadata, the resulting software system, called "caCORE-like" system, is "semantically integrated."

cacore-sdk-docs

This repository holds documents for the caCORE SDK project under the NCIP channel. See https://github.com/NCIP/cacore-sdk for further information.

cacore-sdk-pre411

This is caCORE SDK pre 4.1.1 version repository. These releases are not being supported. Please visit cacore-sdk repository for current development.

cadsr-admin-tool

The caDSR Administration Tool is the main administrative interface to all of the basic editing and maintenance features and components of caDSR tools.

cadsr-api

The caDSR APIs allow developers to build an application to access caDSR metadata and search the database, or to retrieve caDSR Metadata to customize local data collection applications

cadsr-bulk-loader

The caDSR Bulk Loader uploads metadata from an Excel spreadsheet into the caDSR.

cadsr-cde-browser

The CDE Browser is the primary starting point for exploring the contents of the caDSR.

cadsr-cdecurate

The CDE Curation Tool supports creation and editing of Data Element Concepts, Value Domains, and Data Elements.

cadsr-cgmdr

cgMDR has tools enabling semantic annotation from its own metadata repository but also can resolve metadata and terminologies.

cadsr-cgmdr-nci-uk

cgMDR has tools enabling semantic annotation from its own metadata repository but also can resolve metadata and terminologies.

cadsr-formbuilder

caDSR Form Builder allows users to leverage Common Data Element (CDE) metadata to create forms that replicate the content of Case Report Forms (CRFs).

cadsr-freestyle-search

The caDSR Freestyle Search engine performs weighted semantic searches on the content of Administered Items in the caDSR.

cadsr-grid-dataservice

The caDSR Grid Dataservice is a caGrid enabled dataservice that is generated using caGrid framework.