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Name: Andy

Type: User

Bio: A bioinformatician with a broad range of interests

Andy's Projects

curriculum_vitae

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

dotfiles

My own dotfiles

eqtm

Functions for performing eQTM analyses on DMRs

general_bio

A repository containing general scripts that are useful within bioinformatics

hgprj0000008_epiccd_anti_a4b7_sc

Snakemake workflow used to analyze the data associated with the manuscript entitled "Single-cell characterization of peripheral blood mononuclear cells from Crohn’s disease patients on vedolizumab"

hgprj0000008_epiccd_multi_drug

DNA methylation analysis for EPIC-CD vedolizumab and ustekinumab

macidr

The predictor genes and the log odds ratios and the wrapper functions to utilize the classification model as described in PRJ0000004_MACMETA.

ndlib

R package containing handy functions that are mostly geared at methylation analysis

prj0000002_cdmon

Analyses of the DNA methylation data (Illumina HumanMethylation 450k BeadChip) obtained from CD14+ monocytes isolated from female CD patients (active and in remission) and non-CD volunteers

prj0000003_liyim2018

In this project, we performed an integrated DNA methylation gene expression analysis of ileal fibroblasts obtained from Crohn's disease (CD) patients and non-CD patients.