Comments (4)
The baseline is trained as a 5-fold cross-validation. So when reproducing the results you need to respect the splits: you need to identify which cases where in the validation set of fold 0 and run prediction on those with fold0 only, then move on to fold1 etc.
You cannot just run nnUNet_predict beause then you are essentially predicting training data
Best,
Fabian
from kits21.
yes, exactly
from kits21.
@FabianIsensee would be the expert on this. Any ideas?
from kits21.
Got it, and after the merge of predictions of all 5 folds, run evaluate_predictions
from kits21.
Related Issues (20)
- Can't get imaging.nii.gz after run get_imaging.py HOT 2
- ``evaluation_prediction.py`` gets me an error. HOT 1
- python3 kits21/starter_code/get_imaging.py HOT 5
- ModuleNotFoundError: No module named 'requests' HOT 2
- I need a CT scan kidney masses; chromophobe and oncocytoma kidney tumors HOT 4
- bash script downloading only imaging HOT 2
- get_imaging.py experience issue HOT 4
- kidney class kits19 vs kits21 HOT 3
- Strange image.nii.gz HOT 1
- RAW annotation HOT 3
- Dataset Description HOT 1
- Removal of Cyst Label from segmentation HOT 1
- total process HOT 1
- Connection Error while running the get_imaging.py file HOT 1
- meta data in KiTS nii HOT 2
- case_00205 Cyst Instance 1 and Tumor Instance 3 segment the same region HOT 3
- no-contrast CTs get bad performance on KiTS model HOT 1
- KiTS21 papers no longer available on openreview HOT 2
- How to split train and test data? HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from kits21.