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aav-barcode-detection-and-normalization

aav-screening

Code used in the screening for efficient AAV serotypes

aav_fitness_landscape

Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"

abrf_gbirg_ontologystudy

allele_specific_rnaseq

Allele Specific RNAseq

alperweb

My personal web site

ampliconseq_affinit

ampliconseq_test_de_affinit

ampliconseq_with_test_de_affinit

atacseq

Atac-Seq pipeline

barcodeseq

beenet

bootcamp

Biocore bootcamp

bootcamp_stats

RStudio docker image for stats bootcamp

cageseq_pipeline

cecret

Nextflow workflow for our analysis of SARS-COV-2

cellxgene

An interactive explorer for single-cell transcriptomics data

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

chipseq

Chip-Seq pipeline

ckg

Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge discovery making use of all the information contained in the graph

coma

CoMA Pipeline for amplicon sequencing data analysis

crisprseekplus

Interface for crisprseek

datahoarder

Script for grabbing files or folders of the Internet

dcrispr

debrowser

Differential Expression Analysis Toolbox

debrowser-docker

debrowser docker version

debrowser-docs

DEBrowser readthedocs

debrowser_bioconductor_release

debrowser_modular

deep-learning-papers-reading-roadmap

Deep Learning papers reading roadmap for anyone who are eager to learn this amazing tech!