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McGill University's Projects

auto-qpcr icon auto-qpcr

A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, statistics and bar charts.

automatedciliameasurements icon automatedciliameasurements

Pipeline to measure cilia, nuclei, and centrioles and which cilia are close to which nuclei and centrioles using CellProfiler and Python

cellq icon cellq

Image J python /jython macro to analyze 2D cell cultures counting cell density and positive cells for markers of interest

histq icon histq

A Fiji (ImageJ) macro written in jython for automated batch analysis of histology sections.

midbrainorganoid_scrnaseq icon midbrainorganoid_scrnaseq

R scripts for filtering, integrating, clustering, annotating and looking at gene expression within clusters from two samples of three midbrain organoids

orgm icon orgm

A Fiji macro for measuring organoid area and size

orgq icon orgq

analysis 4 channels IF of histology sections of organoids used in Mohammed et al

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