Comments (5)
rneher
commented on August 19, 2024
You changed the name, right?
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rneher
commented on August 19, 2024
certainly works for me. but I need to adjust file names. will push
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rneher
commented on August 19, 2024
just saw you already changed that.
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trvrb
commented on August 19, 2024
Yeah. I did here: blab/nextflu@175b497. The file seems to load okay. (No warnings in console) Sorry, missed the updates. If it's working for you out of the box, I must be doing something wrong. I'll look more Friday. Thank you.
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trvrb
commented on August 19, 2024
I just figured this out. We had left out sequences.json from https://github.com/nextstrain/seasonal-flu/blob/master/batch.py#L66. Easy fix.
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Related Issues (20)
- Unable to run nextstrain command under 'Quickstart with GISAID data' HOT 3
- Revisit deploy-private-nextflu Netlify CLI version pin
- Automate monthly reports
- Use Nextclade to assign clade labels in main phylogenetic workflow
- Export GISAID accessions from metadata into Auspice JSONs
- Add rules to the nextflu-private workflow to rename Auspice JSONs based on the build date and deploy the JSONs to the Nextstrain group
- Filter low-quality sequences by Nextclade QC status
- Integrating FASTA Sequence into Influenza A/H3N2 Evolution Analysis and Visualizing in Nextclade HOT 6
- Running issue nextstrain pipeline HOT 18
- Rename public nextstrain builds to `seasonal-flu`
- "Suffolk" in `lat_longs.tsv` points to somewhere unexpected HOT 1
- Automate deployment of private nextflu.org site
- Use metadata from NA segment in joined metadata when HA segment isn't available
- Plot counts per lineage by region with matplotlib instead of altair
- Use a narrative template file to stub out a date-specific narrative for a given set of dated builds
- Use existing public 2y builds as “representative” trees in our reports
- Rename `master` to `main`
- Nextclade dataset for "broad" H1N1pdm HA misassigns early clade labels
- Run pathogen-embed on HA/NA alignments to flag putative reassortant clades
- Exclude sequences with unusual collection dates HOT 2
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