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ggabernet avatar ggabernet commented on June 16, 2024

Hi @pengjiao ,
yes indeed the BCR Rep-seq data requires knowing the primer information for processing unfortunately. Sometimes it is possible to guess the primers by doing a sequence alignment of the reads, for example with ClustalW

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ggabernet avatar ggabernet commented on June 16, 2024

I will close this issue, but if you have further questions on how to find the primers you can continue asking here. We also have a slack channel that can be more useful for this kind of discussions: https://nf-co.re/join

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