Comments (5)
related discussion for adding cellranger multi
:
#174
The cellranger multi
module on nf-core/modules
has been merged:
nf-core/modules#3229
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@grst Cool. Does that mean I can use it in nf-core/scrnaseq yet or does the module still need to be incoperated?
from scrnaseq.
No, this still needs to be implemented here. I was just linking the issues for reference.
from scrnaseq.
Hi @grst ,
Should this ticket now be closed?
from scrnaseq.
Yes, this is now available with cellranger multi
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Related Issues (20)
- Samplesheet Check Bug HOT 1
- Flexible input read format with STARsolo with --soloBarcodeReadLength HOT 1
- Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 HOT 1
- Clean up mtx conversion code
- Update to the latest simpleaf HOT 5
- allow use of .gz when specifying fast and gtf HOT 5
- Use compressed (gzip) fasta and gtf HOT 3
- cellranger_count.py: remove any existing output directory HOT 3
- Update cellranger modules to latest nf-core/modules versions HOT 1
- cellranger mkref with multiple species
- allow for extra columns in the sample sheet HOT 1
- Sample merging does not work if files are named the same
- 'star' in genome configrations ignored HOT 2
- Cellranger mkref resource flags incorrect HOT 3
- Error with CONCAT_H5AD HOT 3
- Running 'cellranger-arc count' with existing genome index
- cellranger-multi implementation follow-up
- Trimming R1 fast files in all aligners HOT 4
- Time limit of AlevinQC HOT 3
- Specify cellranger version HOT 1
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