Comments (6)
grst
commented on September 26, 2024
1
Should be fixed by #245 which includes the configuration for setting quay.io as default singularity registry.
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Juassis
commented on September 26, 2024
Perfect!
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denisthieffry
commented on September 26, 2024
I got to the same issue, while testing the nf-core/scrnaseq v2.3.2-g06a85e8 on the 10x 1k human PBMCs data set (human healthy donor, v3 chemistry).
Do we have to wait that the template update for nf-core/tools v2.9 be done or is it possible to call a different version of nf-core tools with the current scRNAseq pipeline?
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denisthieffry
commented on September 26, 2024
I found out how to run the pipeline's dev branch, for which the fix has been pulled, by adding "-revision 0e5fc8b" in the command line.
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apeltzer
commented on September 26, 2024
-r devwould work too ;-)
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grst
commented on September 26, 2024
As the fix is on the latest release, I'm closing this issue.
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