Comments (3)
Hi, Sorry for late reply, didn't see the GitHub notification. I haven't gone back to trying this, but if you are updating to alevin-fry soon then I won't worry too much about this issue. Thanks for getting back to me.
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Closing this as alevin-fry is now available from dev
. Please open a new issue if you encounter any problems with it!
from scrnaseq.
Do you still get this issue when using version v2.0 which was released today?
In any case we are planning to switch to the more modern alevin-fry
(#93) in the next update.
from scrnaseq.
Related Issues (20)
- The cellrangerarc cannot start successfully HOT 2
- When aligner is cellrangerarc the step MTX_TO_SEURAT failed HOT 3
- Avoid error on unknown headers in input.csv HOT 4
- Issues with samplesheet.csv as well as additional columns in the samplesheet HOT 3
- Samplesheet Check Bug HOT 1
- Flexible input read format with STARsolo with --soloBarcodeReadLength HOT 1
- Make scrnaseq pipeline v2.5.1 compatible with nextflow v22.04.0 HOT 1
- Clean up mtx conversion code
- Update to the latest simpleaf HOT 3
- allow use of .gz when specifying fast and gtf HOT 4
- Use compressed (gzip) fasta and gtf HOT 3
- cellranger_count.py: remove any existing output directory HOT 3
- Update cellranger modules to latest nf-core/modules versions HOT 1
- cellranger mkref with multiple species
- allow for extra columns in the sample sheet HOT 1
- Sample merging does not work if files are named the same
- 'star' in genome configrations ignored HOT 1
- Cellranger mkref resource flags incorrect HOT 1
- Error with CONCAT_H5AD HOT 2
- Running 'cellranger-arc count' with existing genome index
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