Related Issues (20)
- [`taxprofiler` branch] Add new taxprofiler `sourmash` db
- add a new dataset for est-sfs
- Homo sapiens Genome.gtf test-dataset is invalid
- Add new test data for modkit_pileup
- What should we do with `docs/ADD_NEW_DATA.md` and `docs/USE_EXISTING_DATA.md` on pipeline branches?
- Request to add ONT-Amplicon seq for SARS-CoV-2:Wastewater
- CAT - Contig Annotation Tool custom database HOT 1
- add testdata for variantbenchmarking pipeline
- Test data required for testing scimap/spatiallda module
- Need testdata for mcmicro-celesta
- Testdata for xeniumranger modules
- Update test data for bcl_demultiplex subworkflow
- refactor test data for `cellranger` modules HOT 1
- Add database subsampled data for snpSift module (dbnsnpf) HOT 1
- fix missing `cellranger` data summary info HOT 1
- cellranger data refactor broke tests for non-cellranger modules
- Pipedreams
- Use git-lfs
- Use version tags on branches HOT 1
- [modules] Dataset at `data/genomics/homo_sapiens/illumina/bcl` is too simple HOT 1
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from test-datasets.